Source code for pygmt.src.grdclip

"""
grdclip - Change the range and extremes of grid values.
"""

import xarray as xr
from pygmt.clib import Session
from pygmt.helpers import (
    GMTTempFile,
    build_arg_string,
    fmt_docstring,
    kwargs_to_strings,
    use_alias,
)


[docs]@fmt_docstring @use_alias( G="outgrid", R="region", Sa="above", Sb="below", Si="between", Sr="new", V="verbose", ) @kwargs_to_strings( R="sequence", Sa="sequence", Sb="sequence", Si="sequence", Sr="sequence", ) def grdclip(grid, **kwargs): r""" Sets values in a grid that meet certain criteria to a new value. Produce a clipped ``outgrid`` or :class:`xarray.DataArray` version of the input ``grid`` file. The parameters ``above`` and ``below`` allow for a given value to be set for values above or below a set amount, respectively. This allows for extreme values in a grid, such as points below a certain depth when plotting Earth relief, to all be set to the same value. Full option list at :gmt-docs:`grdclip.html` {aliases} Parameters ---------- grid : str or xarray.DataArray The file name of the input grid or the grid loaded as a DataArray. outgrid : str or None The name of the output netCDF file with extension .nc to store the grid in. {R} above : str or list or tuple [*high*, *above*]. Set all data[i] > *high* to *above*. below : str or list or tuple [*low*, *below*]. Set all data[i] < *low* to *below*. between : str or list or tuple [*low*, *high*, *between*]. Set all data[i] >= *low* and <= *high* to *between*. new : str or list or tuple [*old*, *new*]. Set all data[i] == *old* to *new*. This is mostly useful when your data are known to be integer values. {V} """ with GMTTempFile(suffix=".nc") as tmpfile: with Session() as lib: file_context = lib.virtualfile_from_data(check_kind="raster", data=grid) with file_context as infile: if "G" not in kwargs.keys(): # if outgrid is unset, output to tempfile kwargs.update({"G": tmpfile.name}) outgrid = kwargs["G"] arg_str = " ".join([infile, build_arg_string(kwargs)]) lib.call_module("grdclip", arg_str) if outgrid == tmpfile.name: # if user did not set outgrid, return DataArray with xr.open_dataarray(outgrid) as dataarray: result = dataarray.load() _ = result.gmt # load GMTDataArray accessor information else: result = None # if user sets an outgrid, return None return result
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